PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG322500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 234aa    MW: 25411 Da    PI: 8.804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG322500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-1071118454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++  rE+ RRdr+N++f+eL  +l +    + +K +K++iL  A + +++L
  Pavir.5NG322500.1.p  71 TKACREKLRRDRLNERFNELCAILEPG---KPPKADKVAILSDAARLLSQL 118
                          5678**********************9...99***************9999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1261133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.73867118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-871118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.23E-671123No hitNo description
SMARTSM003537.4E-773124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-1274140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSCGGQAGGW LLDYGLVEEE IQGSEFIYMV DDPAVSSVIL GFDAPRKEDG VQDNTAAKKR  60
SRPESSAPPG TKACREKLRR DRLNERFNEL CAILEPGKPP KADKVAILSD AARLLSQLRA  120
EAQKLKQSNE SLQDSIKSLK AEKSKLRDEK TRLKAEKERL EQMLKGVSAA AAPAPFVPHP  180
AAAAAPSFHP AAFVQAGKFV PYPTYPPPAA FWQWIPPTSL DTSKDPAHWP PVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.36460.0leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0363720.0BT036372.1 Zea mays full-length cDNA clone ZM_BFb0110A15 mRNA, complete cds.
GenBankBT0402710.0BT040271.1 Zea mays full-length cDNA clone ZM_BFc0075C03 mRNA, complete cds.
GenBankBT0413880.0BT041388.1 Zea mays full-length cDNA clone ZM_BFc0115M23 mRNA, complete cds.
GenBankBT0876160.0BT087616.1 Zea mays full-length cDNA clone ZM_BFb0133E06 mRNA, complete cds.
GenBankKJ7268900.0KJ726890.1 Zea mays clone pUT3433 bHLH transcription factor (bHLH118) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961887.11e-147PREDICTED: transcription factor ILR3-like
SwissprotQ9FH372e-61ILR3_ARATH; Transcription factor ILR3
TrEMBLK3Z9B21e-147K3Z9B2_SETIT; Uncharacterized protein
STRINGSi023133m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93863136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.18e-55bHLH family protein